He was shot in the head and killed in 1993 on a mountain road in the sensitive border area with Ossetia whilst on a "private trip" in a vehicle driven by the Georgian head of security Elgar Gogoladze.
This program had been initiated under the cover of USAID after a state visit to Georgia in 1992 by the American foreign secretary James Baker III immediately after Eduard Shevardnadze had been installed as head of state in the follow-up of a bloody coup d'etat supported by foreign powers against the democratically elected president of Georgia Zviad Gamsakhurdia, who died under suspicious circumstances a year later.
Woodruffs coffin was accompanied home personally by CIA director James Woolsey who at the time of the assassination had "coincidentally" been in Moscow.
He also held a speech at the funeral service.Anzor Sharmaidze, a 20 year old former Soviet draftee, was convicted of Woodruff's murder.
Sharmaidze was alleged to have been a "drunk bandit" and to have randomly shot at Woodruff.
Although initially not formally cleared of the charges, he was released from jail in 2008 after witnesses stated they were forced via torture to implicating him.In 2013, Georgian Minister of Justice Tea Tsulukiani stated that "[t]he case has not been properly investigated".
Tsulukiani said she believed that the killing embarrassed President of Georgia Eduard Shevardnadze and cast doubt in the United States government about his ability to lead his nation.Woodruff was married twice.
With his first spouse, he had a daughter and son.
He was survived by his second wife, Meredith, a former CIA officer, and their three children, and two sisters, one a nurse in Arkansas.In a 2018 book by Michael Pullara, The Spy Who Was Left Behind: Russia, the United States, and the True Story of the Betrayal and Assassination of a CIA Agent, the author brings together a unique mix of police procedural, personal memoir and political thriller, to tell the true-life tale of the author's research into the death of CIA station chief Freddie Woodruff.
The story involves complex post-cold war political intrigue, but the narrative is tightly driven by the core story of Pullara's personal investigation into the unsolved murder and the extensive cover-up that followed in Washington and Moscow.