Flemming Pedersen (born 6 June 1963) is a Danish football manager.
He is currently the manager of Danish Superliga club FC Nordsjælland.
Pedersen was the manager of various clubs in Northern Zealand before joining FC Nordsjælland as youth coach in 2006.
He later became Kasper Hjulmand's assistant in Nordsjælland and Mainz 05 and had a brief spell at brentford as youth- and reserves coach before returning to Nordsjælland as technical director.
In February 2019 it was announced that he would succeed Hjulmand as manager of FC Nordsjælland in the summer, but when Hjulmand left the club in March 2019, Pedersen was named manager immediately.